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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3259364_3259929_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3259364 - 3259929
Intron Length:
566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
ATTGCTTTAATT
Flanking Amino Acid:
HVNCQQIHFARRTRITQFSQ
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
73.1
43.9
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
78.7
0.65
0.8
79.4
27.8
Minor 5ss
38.3
-1.3
3
51.2
45.1
Minor BPS
75.6
0.88
1.2
85.82
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002747
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002776
3252368 - 3259979
7612