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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3268853_3275882_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3268853 - 3275882
Intron Length:
7030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TATTCCTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
TATTCCTCCATA
Flanking Amino Acid:
NRKKLMAIFSKVDINNDKKI
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
33.2
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
74.9
0.56
0.8
69.7
30.7
Minor 5ss
43.6
-0.7
2.9
58.5
40.3
Minor BPS
57.6
0.23
2
72.89
39.2

Associated Gene:

Gene:
SDF4
Ensembl Gene ID:
ENSAPLG00000002823
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028337
3262917 - 3285632
22716
ENSAPLT00000002868
3262847 - 3277161
14315