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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3276250_3277103_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3276250 - 3277103
Intron Length:
854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGGG
5'SS Class:
major
3'SS Sequence:
TTTCTGTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
ATTTGTTTATGC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
49.8
46.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
84.9
0.79
0.7
80.8
31.2
Minor 5ss
33.1
-1.9
3.7
46.9
48.5
Minor BPS
47.3
-0.2
2.2
63.92
42.3

Associated Gene:

Gene:
SDF4
Ensembl Gene ID:
ENSAPLG00000002823
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002868
3262847 - 3277161
14315