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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3276250_3285424_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3276250 - 3285424
Intron Length:
9175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
ATTTGTTTATGC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
75.6
36.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
84.9
0.79
0.7
80.8
31.2
Minor 5ss
36.1
-1.6
3.3
45.9
49.3
Minor BPS
47.3
-0.2
2.2
63.92
42.3

Associated Gene:

Gene:
SDF4
Ensembl Gene ID:
ENSAPLG00000002823
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028337
3262917 - 3285632
22716