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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3346491_3346996_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3346491 - 3346996
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTGCCTTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
AAGTGTTTATCT
Flanking Amino Acid:
IYQFSANVHIDHSELKSKVQ
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
75.3
34.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
73.2
0.52
0.8
65
36.3
Minor 5ss
30.4
-2.2
3.2
42.4
44.3
Minor BPS
49.2
0.02
2
67.04
44

Associated Gene:

Gene:
C1QTNF12
Ensembl Gene ID:
ENSAPLG00000003073
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003116
3340605 - 3365325
24721