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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3351100_3351354_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3351100 - 3351354
Intron Length:
255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAA
U12 Branch Point Sequence:
TTTTCTTCTATT
Flanking Amino Acid:
LLQEFKEILKEAIERRASLA
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
67.1
0.42
1.1
57.7
41.3
Major PPT
86.1
0.81
0.7
84.9
29.9
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
61.5
0.44
1.8
83.99
37

Associated Gene:

Gene:
C1QTNF12
Ensembl Gene ID:
ENSAPLG00000003073
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003116
3340605 - 3365325
24721