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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3373279_3373762_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3373279 - 3373762
Intron Length:
484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGCTCC
5'SS Class:
major
3'SS Sequence:
TTTCCCTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATAAC
U12 Branch Point Sequence:
TTTCCCTCCACA
Flanking Amino Acid:
LGSIETSEFTKRQLAAQSLA
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
60.8
39.3
Major BPS
62.7
0.32
1.2
64
39.8
Major PPT
81.8
0.72
0.7
76.5
25.7
Minor 5ss
47.3
-0.3
2.7
66
38.9
Minor BPS
59.9
0.31
2
77.44
39.2

Associated Gene:

Gene:
UBE2J2
Ensembl Gene ID:
ENSAPLG00000003153
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003202
3371415 - 3375357
3943