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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3374115_3374962_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3374115 - 3374962
Intron Length:
848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTATGTAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ATCTCTTTATGT
Flanking Amino Acid:
VRGPEMTPYEGGYYHGKLIF
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
0.9
71.1
32.5
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
72.9
0.52
1
67.3
42.6
Minor 5ss
30.1
-2.3
3.3
39.5
45.9
Minor BPS
55.6
0.26
1.9
73.56
43.9

Associated Gene:

Gene:
UBE2J2
Ensembl Gene ID:
ENSAPLG00000003153
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003202
3371415 - 3375357
3943