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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3375004_3375226_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3375004 - 3375226
Intron Length:
223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CCTGCTTTAATT
Flanking Amino Acid:
AEPLPSNILEWHYVVRGPEM
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.9
32.8
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
85
0.79
0.6
84.9
22.8
Minor 5ss
36.3
-1.6
3
48
41.5
Minor BPS
66.8
0.61
1.4
74.65
43.4

Associated Gene:

Gene:
UBE2J2
Ensembl Gene ID:
ENSAPLG00000003153
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003202
3371415 - 3375357
3943