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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3382518_3384353_R

Intron Information:

Intron Rank:
145394
Intron Class:
major
Intron Phase:
Intron Coordinates:
3382518 - 3384353
Intron Length:
1836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTCGT
5'SS Class:
major
3'SS Sequence:
CCCTCTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
TTTTCCCCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
67.1
43.8
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
81.2
0.7
0.7
75.8
26.2
Minor 5ss
42.2
-0.9
2.9
55.8
43.6
Minor BPS
52.4
0.16
2.1
81.17
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025624
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024152
3379604 - 3395625
16022