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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3385664_3386755_R

Intron Information:

Intron Rank:
145396
Intron Class:
major
Intron Phase:
Intron Coordinates:
3385664 - 3386755
Intron Length:
1092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTACGTAAC
5'SS Class:
major
3'SS Sequence:
TCCCCTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTTCTCAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.6
0.27
1.4
63.8
42.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
74.4
0.55
0.9
70.9
33.3
Minor 5ss
36.8
-1.5
3
49.5
40.1
Minor BPS
71.4
0.75
1.6
89.47
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025624
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024152
3379604 - 3395625
16022