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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3386813_3394644_R

Intron Information:

Intron Rank:
145397
Intron Class:
major
Intron Phase:
Intron Coordinates:
3386813 - 3394644
Intron Length:
7832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGCTATTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
100
1.24
0.5
100
0
Major PPT
78.6
0.64
0.9
77.5
35.7
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
59.4
0.27
1.6
68.53
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025624
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024152
3379604 - 3395625
16022