Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3390904_3394644_R

Intron Information:

Intron Rank:

145398

Intron Class:

major

Intron Phase:

Intron Coordinates:

3390904 - 3394644

Intron Length:

3741

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

ATTATGGCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCATTAT

U12 Branch Point Sequence:

TGTTGCTTCATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.94

0.8

26.1

Major BPS

72.1

0.55

1.1

62.3

43.7

Major PPT

70.3

0.46

62.5

43.6

Minor 5ss

35.2

-1.7

2.7

39.2

40.5

Minor BPS

57.4

0.31

2.2

80.32

42.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025624

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026538

3389990 - 3395625

5636