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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3395981_3396805_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3395981 - 3396805
Intron Length:
825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACATGT
5'SS Class:
major
3'SS Sequence:
CTGGTCCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
ATATTCACACCT
Flanking Amino Acid:
AITICNLDPYRFELVSEHLV
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
72.5
39.9
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
71.7
0.49
0.9
64.6
36.6
Minor 5ss
45.2
-0.5
3
65.7
45.3
Minor BPS
46.2
-0.2
2
68.35
42.1

Associated Gene:

Gene:
SCNN1D
Ensembl Gene ID:
ENSAPLG00000003451
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003531
3395646 - 3404308
8663