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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3398683_3399844_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3398683 - 3399844
Intron Length:
1162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTGTAATTAAAA
Flanking Amino Acid:
CQYDGEPCRPSDYVHFHHPV
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.9
36.3
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
82.7
0.73
0.9
80.2
37.3
Minor 5ss
46.6
-0.3
2.5
61.6
43.3
Minor BPS
56
0.19
1.9
71.3
40.1

Associated Gene:

Gene:
SCNN1D
Ensembl Gene ID:
ENSAPLG00000003451
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003531
3395646 - 3404308
8663