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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3401846_3402006_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3401846 - 3402006
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTCTCTCATTT
Flanking Amino Acid:
YCNYNKQPAWGHCFYQLYNR
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
68.7
36.4
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
84.4
0.77
0.8
79.1
34.3
Minor 5ss
30.3
-2.3
3.2
31.5
42.2
Minor BPS
54.8
0.23
1.8
77.31
39.5

Associated Gene:

Gene:
SCNN1D
Ensembl Gene ID:
ENSAPLG00000003451
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003531
3395646 - 3404308
8663