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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3403285_3403583_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3403285 - 3403583
Intron Length:
299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCAACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
TTTTCTCCAACG
Flanking Amino Acid:
HQNGYNSTSNRKDIAKVTIF
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1.1
79.6
29.7
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
71.6
0.49
0.9
66.7
33
Minor 5ss
36.9
-1.5
2.7
44.2
43.6
Minor BPS
58.7
0.13
2
72.5
40.2

Associated Gene:

Gene:
SCNN1D
Ensembl Gene ID:
ENSAPLG00000003451
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003531
3395646 - 3404308
8663