Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3403660_3403897_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3403660 - 3403897

Intron Length:

238

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTAGGTTGC

5'SS Class:

major

3'SS Sequence:

ATCCTTTCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TGTTTGGTAAAT

Flanking Amino Acid:

QSVNESPLLSDNLLLSSMGS

Intron Amino Acid Position:

508

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.7

0.37

1.1

58.2

42.2

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

77.7

0.62

0.8

72.2

31.8

Minor 5ss

41.3

-1

3.1

57.2

41.7

Minor BPS

45.8

-0.2

2.6

73.29

43.5

Associated Gene:

Gene:

SCNN1D

Ensembl Gene ID:

ENSAPLG00000003451

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003531

3395646 - 3404308

8663