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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3485900_3487712_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3485900 - 3487712
Intron Length:
1813

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCGCCCAGG
5'SS Class:
major
3'SS Sequence:
TGGAGATCCTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
AATGATATAAAG
Flanking Amino Acid:
TSRGRYQLPPGLWLARGRAL
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.8
0.3
1.3
50.4
46
Major BPS
76.8
0.67
1
66
40.9
Major PPT
45.4
-0.2
1.7
47.4
45
Minor 5ss
27.5
-2.6
3.9
39.8
45.8
Minor BPS
42.4
-0.7
1.9
46.36
39.7

Associated Gene:

Gene:
PUSL1
Ensembl Gene ID:
ENSAPLG00000004946
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005110
3485845 - 3504236
18392