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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3485939_3487787_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3485939 - 3487787
Intron Length:
1849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAGGTGAG
5'SS Class:
major
3'SS Sequence:
TTGCAGAAGGCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CTCACATTGACT
Flanking Amino Acid:
ALWMAQRADIPQNLKPVVPI
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.4
63.2
43.4
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
53.2
0.07
1.2
48
43.7
Minor 5ss
32
-2.1
3.4
38.3
40.7
Minor BPS
57.6
0.32
1.7
73.17
43.7

Associated Gene:

Gene:
PUSL1
Ensembl Gene ID:
ENSAPLG00000004946
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032097
3485845 - 3504236
18392