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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3487969_3495712_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3487969 - 3495712
Intron Length:
7744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCCACCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCCCAT
U12 Branch Point Sequence:
TCTTTTCCACCA
Flanking Amino Acid:
LNHHLKSEPIRILSAYRVTS
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
71.4
36.8
Major BPS
63.5
0.33
1.2
72.5
34.6
Major PPT
80.6
0.69
0.8
74.8
34.9
Minor 5ss
34.6
-1.8
2.8
40.9
45.3
Minor BPS
44.3
-0.4
2
59.19
41.2

Associated Gene:

Gene:
PUSL1
Ensembl Gene ID:
ENSAPLG00000004946
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032097
3485845 - 3504236
18392
ENSAPLT00000005110
3485845 - 3504236
18392