Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3497098_3504034_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3497098 - 3504034

Intron Length:

6937

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAACA

5'SS Class:

strong_major

3'SS Sequence:

AACCCCAGCAGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGCCCAT

U12 Branch Point Sequence:

AGTTGAGGAACC

Flanking Amino Acid:

SGFLAHHYESRNLLSHVLSF

Intron Amino Acid Position:

212

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.9

0.89

0.8

79.5

28.2

Major BPS

57.1

0.18

1.4

66.4

42.2

Major PPT

43.1

-0.3

1.6

38.9

32.6

Minor 5ss

28.3

-2.5

2.7

32.3

41.9

Minor BPS

-0.7

2.5

55.84

41.9

Associated Gene:

Gene:

PUSL1

Ensembl Gene ID:

ENSAPLG00000004946

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005110

3485845 - 3504236

18392