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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3515331_3515908_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3515331 - 3515908
Intron Length:
578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GATTCTCAAAGC
Flanking Amino Acid:
RKLEMEGRQILEVKMQVEYM
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
83.4
29
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
85.6
0.8
0.7
80.2
25.1
Minor 5ss
48
-0.2
2.8
68.9
36.6
Minor BPS
44.3
-0.4
2.1
56.71
41.8

Associated Gene:

Gene:
INTS11
Ensembl Gene ID:
ENSAPLG00000005238
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005480
3512685 - 3521548
8864