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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3516681_3517233_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3516681 - 3517233
Intron Length:
553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTCTCATGGATC
Flanking Amino Acid:
QELCILLETFWERMNLKAPI
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.9
31.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
88.7
0.87
0.6
84.3
23.6
Minor 5ss
27.7
-2.6
3
29.3
37
Minor BPS
52.6
0.06
1.8
67.54
38.3

Associated Gene:

Gene:
INTS11
Ensembl Gene ID:
ENSAPLG00000005238
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005480
3512685 - 3521548
8864