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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3518332_3519035_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3518332 - 3519035
Intron Length:
704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTGTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTAACTTGATT
Flanking Amino Acid:
DYNMTPDRHLGAAWIDKCRP
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
72.7
44.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.4
0.71
0.8
80.3
31.8
Minor 5ss
34.7
-1.7
2.6
34.3
41.4
Minor BPS
61.1
0.43
1.6
76.77
40

Associated Gene:

Gene:
INTS11
Ensembl Gene ID:
ENSAPLG00000005238
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005480
3512685 - 3521548
8864