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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3519268_3519383_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3519268 - 3519383
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTGTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TTTGCTTGTACA
Flanking Amino Acid:
VAVHLHQTVQVDEELEIKAY
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78.2
29.5
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
81
0.7
0.9
76
38
Minor 5ss
32.3
-2
3.3
42.9
44.7
Minor BPS
53.8
0.11
1.9
71.77
40.2

Associated Gene:

Gene:
INTS11
Ensembl Gene ID:
ENSAPLG00000005238
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005480
3512685 - 3521548
8864