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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3520601_3520934_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3520601 - 3520934
Intron Length:
334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTGGTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
GGTGTCTGATCT
Flanking Amino Acid:
MPEIKVTPLGAGQDVGRSC
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
1
71.6
40.2
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
72.8
0.51
1.1
64.9
45.7
Minor 5ss
34.1
-1.8
2.8
34.5
41
Minor BPS
48.2
-0
1.8
66.04
44.2

Associated Gene:

Gene:
INTS11
Ensembl Gene ID:
ENSAPLG00000005238
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005480
3512685 - 3521548
8864