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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3521408_3521495_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
3521408 - 3521495
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
CCCCCGCCGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTAACC
Flanking Amino Acid:
PYLRGWRGLVRFLNSLGAIF
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
71.4
36.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
58.8
0.2
1
53.1
31.1
Minor 5ss
34.6
-1.8
2.8
40.9
45.3
Minor BPS
79.9
0.92
1
82.59
30.6

Associated Gene:

Gene:
CPTP
Ensembl Gene ID:
ENSAPLG00000005804
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005999
3521286 - 3522018
733