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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3527368_3527611_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3527368 - 3527611
Intron Length:
244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTATTATAATT
Flanking Amino Acid:
CPKATIRSWQLLHFMNTFTF
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
100
1.24
0.5
100
0
Major PPT
83.7
0.76
0.7
81.9
29.3
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
55.1
0.24
1.6
72.63
39

Associated Gene:

Gene:
TAS1R3
Ensembl Gene ID:
ENSAPLG00000005810
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006017
3524983 - 3529652
4670