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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3527825_3528122_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3527825 - 3528122
Intron Length:
298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGGGCAAA
5'SS Class:
weak_major
3'SS Sequence:
GCCTACATCGGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
ACTTATTTACCT
Flanking Amino Acid:
FHTADKKVKRCFRECKPGQI
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57
0.17
1.1
54.8
40.2
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
47.4
-0.1
1.7
50.3
37.7
Minor 5ss
33.1
-1.9
3.1
35
42.6
Minor BPS
57.3
0.31
1.8
74.83
42.2

Associated Gene:

Gene:
TAS1R3
Ensembl Gene ID:
ENSAPLG00000005810
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006017
3524983 - 3529652
4670