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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3542033_3542545_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3542033 - 3542545
Intron Length:
513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
ACAGCTTTCACC
Flanking Amino Acid:
CYYVFGDLCGNMAALNLNNG
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
71.7
34.4
Major BPS
77.7
0.69
1
81
30.2
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
42.7
-0.8
2.7
56.3
41.9
Minor BPS
49.1
-0
1.8
56.77
42.3

Associated Gene:

Gene:
DVL1
Ensembl Gene ID:
ENSAPLG00000006207
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006513
3537630 - 3609023
71394