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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3543081_3547674_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3543081 - 3547674
Intron Length:
4594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTCATTTCAAAG
Flanking Amino Acid:
SLTSSIPDSEKLEESPLTVK
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
75.1
35.1
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
85
0.79
0.8
77.9
36.6
Minor 5ss
36.2
-1.6
2.9
44.9
36.9
Minor BPS
47.3
-0.3
1.7
52.93
42

Associated Gene:

Gene:
DVL1
Ensembl Gene ID:
ENSAPLG00000006207
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006513
3537630 - 3609023
71394