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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_354321_421097_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
354321 - 421097
Intron Length:
66777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGGAGG
5'SS Class:
major
3'SS Sequence:
CTTTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TTACATTTGACT
Flanking Amino Acid:
VTKRQPDGNEVPSDPPASKK
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
60.6
45.5
Major BPS
73.9
0.59
1
81
30.2
Major PPT
89.4
0.89
0.8
88
29.4
Minor 5ss
25.1
-2.9
3.1
30.7
42.8
Minor BPS
62
0.46
1.5
78.58
37.2

Associated Gene:

Gene:
SKI
Ensembl Gene ID:
ENSAPLG00000009794
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010223
329894 - 431579
101686