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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3547825_3549440_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3547825 - 3549440
Intron Length:
1616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CCCTGTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TCTGATTCAATT
Flanking Amino Acid:
TPRSYFTIPRAEPVRPIDPA
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.7
33.9
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
81.1
0.7
0.8
75.3
33.1
Minor 5ss
30.1
-2.3
2.5
26.5
36
Minor BPS
49.3
0.03
1.8
68.49
43.1

Associated Gene:

Gene:
DVL1
Ensembl Gene ID:
ENSAPLG00000006207
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006513
3537630 - 3609023
71394