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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3551456_3552496_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3551456 - 3552496
Intron Length:
1041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGCTG
5'SS Class:
major
3'SS Sequence:
TTATATTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTTCTGTTATA
Flanking Amino Acid:
RKQRMRQIDRSSSFSSITDS
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
64.3
47.1
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
86
0.81
0.8
81
36
Minor 5ss
33.9
-1.8
3.4
39.3
46
Minor BPS
52.6
0.08
2.3
74.49
37.5

Associated Gene:

Gene:
DVL1
Ensembl Gene ID:
ENSAPLG00000006207
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006513
3537630 - 3609023
71394