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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3558172_3568288_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3558172 - 3568288
Intron Length:
10117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTCCATTTATT
Flanking Amino Acid:
RRRNREGHEDVPRINGHPKL
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
73.2
37.4
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
86.7
0.83
0.7
82.7
25.9
Minor 5ss
31.6
-2.1
2.9
39.6
39.8
Minor BPS
59.8
0.39
1.9
83.13
37.4

Associated Gene:

Gene:
DVL1
Ensembl Gene ID:
ENSAPLG00000006207
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006513
3537630 - 3609023
71394