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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3621652_3622536_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3621652 - 3622536
Intron Length:
885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAATG
5'SS Class:
strong_major
3'SS Sequence:
AATTTGCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TCCATTTCAATT
Flanking Amino Acid:
FPAKNIDLDKDFRKEYCK*
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
77.4
37.4
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
78.5
0.64
0.9
74.3
40.5
Minor 5ss
37.2
-1.5
3
49.1
46.7
Minor BPS
49.8
0.06
1.5
63.61
41.8

Associated Gene:

Gene:
MXRA8
Ensembl Gene ID:
ENSAPLG00000006806
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007075
3621626 - 3632113
10488