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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3623363_3624017_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3623363 - 3624017
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
ATTCCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CCGTTTTTCACT
Flanking Amino Acid:
GYEYNVKKYGEKDVNLKEFT
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
80.8
33.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
87.2
0.84
0.7
84.9
29.1
Minor 5ss
40.6
-1.1
2.8
47.9
41.8
Minor BPS
52.3
0.15
1.8
66
45.6

Associated Gene:

Gene:
MXRA8
Ensembl Gene ID:
ENSAPLG00000006806
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007075
3621626 - 3632113
10488