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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3624049_3625043_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3624049 - 3625043
Intron Length:
995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCATTTTATTT
Flanking Amino Acid:
VLITRKRRQRGYEYNVKKYG
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.9
33.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.9
0.63
0.8
77.2
31.5
Minor 5ss
33.9
-1.8
3.5
49.9
46.5
Minor BPS
54.9
0.23
1.6
71.35
40.7

Associated Gene:

Gene:
MXRA8
Ensembl Gene ID:
ENSAPLG00000006806
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007075
3621626 - 3632113
10488