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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3629871_3631101_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3629871 - 3631101
Intron Length:
1231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
GTCATCTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
GGCTCTACAACT
Flanking Amino Acid:
VKIQLDVTKKAKAAKEYWDG
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
72.2
39.5
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
71.6
0.49
0.9
64.7
36.4
Minor 5ss
29.5
-2.4
3.4
39.1
46.7
Minor BPS
49.1
0.01
1.8
66.89
43.4

Associated Gene:

Gene:
MXRA8
Ensembl Gene ID:
ENSAPLG00000006806
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007075
3621626 - 3632113
10488