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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3656515_3657377_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3656515 - 3657377
Intron Length:
863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTATG
5'SS Class:
major
3'SS Sequence:
TCCACTCCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
ATGGTTTCCACT
Flanking Amino Acid:
LKVYPYRIAKTALNMITRCL
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
75.6
40
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
70.8
0.47
0.8
62.1
34.7
Minor 5ss
41.8
-0.9
2.5
51.4
45.2
Minor BPS
44.2
-0.3
2
61.26
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006980
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007242
3656076 - 3665401
9326