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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3657954_3658272_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3657954 - 3658272
Intron Length:
319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TCAGTCTTCACT
Flanking Amino Acid:
QYSNIRLLQLDVVCENSIKK
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79.3
31.1
Major BPS
77.5
0.68
1
79.6
33
Major PPT
76.7
0.6
0.9
72
32.5
Minor 5ss
29.2
-2.4
2.5
25
36.8
Minor BPS
55
0.24
1.9
71.66
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006980
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007242
3656076 - 3665401
9326