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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3658325_3665260_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3658325 - 3665260
Intron Length:
6936

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACACAC
U12 Branch Point Sequence:
GCTAACACAAAT
Flanking Amino Acid:
ATCRYPEKAQELQQLSKQYS
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
70.6
41.4
Major BPS
60
0.25
1
66.9
29.8
Major PPT
86.8
0.83
0.6
81.3
30.7
Minor 5ss
36.7
-1.5
3.3
50.2
46.4
Minor BPS
41.6
-0.5
2
57.81
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006980
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007242
3656076 - 3665401
9326