Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3673494_3674272_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3673494 - 3674272

Intron Length:

779

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGTTGT

5'SS Class:

strong_major

3'SS Sequence:

CTTCTTTTTCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTCAA

U12 Branch Point Sequence:

CTTTCAAAAATA

Flanking Amino Acid:

PSGFSPAPKNESPKEVKGNK

Intron Amino Acid Position:

350

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

0.9

76.6

34.9

Major BPS

78.4

0.71

0.9

81.3

29.8

Major PPT

86.8

0.83

0.7

80.5

31.5

Minor 5ss

36.6

-1.5

2.9

46.4

44.2

Minor BPS

47.1

-0.2

2.1

65.2

41.5

Associated Gene:

Gene:

CCNL2

Ensembl Gene ID:

ENSAPLG00000007159

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038114

3671970 - 3675746

3777

ENSAPLT00000007461

3671970 - 3680998

9029