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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3679178_3679455_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3679178 - 3679455
Intron Length:
278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTTTA
5'SS Class:
major
3'SS Sequence:
AATTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TCTTTTGGAATT
Flanking Amino Acid:
FHRLRHLREKKKPVPLILDQ
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
77.8
33.2
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
80.2
0.68
0.9
73.7
40.8
Minor 5ss
44.1
-0.6
3.1
57.4
41.7
Minor BPS
48.7
-0
2.1
71.39
40.7

Associated Gene:

Gene:
CCNL2
Ensembl Gene ID:
ENSAPLG00000007159
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007461
3671970 - 3680998
9029