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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3679566_3679841_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3679566 - 3679841
Intron Length:
276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
TTGAGCAAAACA
Flanking Amino Acid:
TKSFVKHSMEHVSMACVHLA
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
83.5
0.75
0.9
80.8
36.8
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
44.2
-0.4
2.3
60.8
45

Associated Gene:

Gene:
CCNL2
Ensembl Gene ID:
ENSAPLG00000007159
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007461
3671970 - 3680998
9029