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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3679917_3680668_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3679917 - 3680668
Intron Length:
752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCCCC
5'SS Class:
major
3'SS Sequence:
GTTTCCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTTTATTAATA
Flanking Amino Acid:
AAGILLRLPQVAMATGQVLF
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
61.6
41.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
83.4
0.75
0.7
81.5
30.4
Minor 5ss
37.7
-1.4
3.3
51.2
45.5
Minor BPS
69.8
0.62
1.5
78.59
31.1

Associated Gene:

Gene:
CCNL2
Ensembl Gene ID:
ENSAPLG00000007159
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007461
3671970 - 3680998
9029