About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3682020_3683394_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3682020 - 3683394
Intron Length:
1375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGCATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
GAGTACTTAACC
Flanking Amino Acid:
YPAFIGNLLKSQVELNRKML
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
76.9
38.6
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
71.7
0.49
0.9
69.9
35.7
Minor 5ss
32.8
-2
3.7
45.9
49.3
Minor BPS
67.2
0.52
1.5
69.84
40.9

Associated Gene:

Gene:
MRPL20
Ensembl Gene ID:
ENSAPLG00000022210
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025411
3681846 - 3684918
3073