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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3683473_3683772_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3683473 - 3683772
Intron Length:
300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAAGAGC
5'SS Class:
major
3'SS Sequence:
TTTACTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
AATATCTTATCA
Flanking Amino Acid:
RKEKKRLLRALWITRIEAAS
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
61.5
43.2
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
87.6
0.85
0.7
85.2
29.4
Minor 5ss
32.4
-2
3.3
43.3
44.3
Minor BPS
58.9
0.28
1.6
67.6
38.4

Associated Gene:

Gene:
MRPL20
Ensembl Gene ID:
ENSAPLG00000022210
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025411
3681846 - 3684918
3073