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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_3683884_3684831_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3683884 - 3684831
Intron Length:
948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTGCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
GATAACTGAACA
Flanking Amino Acid:
RVQEVLKYARHFRGRKNRCY
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
83.7
0.76
0.9
81.3
36.4
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
54
0.12
1.7
65.04
40

Associated Gene:

Gene:
MRPL20
Ensembl Gene ID:
ENSAPLG00000022210
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025411
3681846 - 3684918
3073